Holm L, Sander C (1998) Dictionary of recurrent domains in protein structures.Holm L, Park J (2000) DaliLite workbench for protein structure comparison.Holm L, Kääriäinen S, Rosenström P, Schenkel A (2008) Searching protein structure databases with DaliLite v.3.Holm L, Rosenström P (2010) Dali server: conservation mapping in 3D.Holm L, Laakso LM (2016) Dali server update.Holm L (2020) Using Dali for Protein Structure Comparison.Holm L, Sander C (1995) Dali: a network tool for protein structure comparison.Holm L, Sander C (1996) Mapping the protein universe.Hasegawa H, Holm L (2009) Advances and pitfalls of protein structural alignment.Holm L (2020) DALI and the Persistence of Protein Shape.Holm L (2022) Dali server: structural unification of protein families.All against all structure comparison - returns a structural similarity dendrogram for a set of structures specified by the user.Pairwise structure comparison - compares one query structure against those specified by the user.Hierarchical AF-DB search - compares one query structure against a species subset of the AlphaFold DatabaseĪnd two types of structure comparisons of user selected structures:.Exhaustive PDB25 search - compares one query structure against a representative subset of the Protein Data Bank.Heuristic PDB search - compares one query structure against those in the Protein Data Bank.You can perform three types of database searches: Megausers please consider downloading the standalone program. In favourable cases, comparing 3D structures may reveal biologically interesting similarities that are not detectable by comparing sequences.Ĭheck queue status here.
You submit the coordinates of a query protein structure and Dali compares them against those in the Protein Data Bank (PDB). The Dali server is a network service for comparing protein structures in 3D.
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